Sequencing Crop Genomes: A Gateway to Improve Tropical Agriculture
Identifieur interne : 000057 ( Main/Exploration ); précédent : 000056; suivant : 000058Sequencing Crop Genomes: A Gateway to Improve Tropical Agriculture
Auteurs : Gincy Paily Thottathil [Malaisie] ; Kandakumar Jayasekaran [Malaisie, Singapour] ; Ahmad Sofiman Othman [Malaisie]Source :
- Tropical Life Sciences Research [ 1985-3718 ] ; 2016.
Abstract
Agricultural development in the tropics lags behind development in the temperate latitudes due to the lack of advanced technology, and various biotic and abiotic factors. To cope with the increasing demand for food and other plant-based products, improved crop varieties have to be developed. To breed improved varieties, a better understanding of crop genetics is necessary. With the advent of next-generation DNA sequencing technologies, many important crop genomes have been sequenced. Primary importance has been given to food crops, including cereals, tuber crops, vegetables, and fruits. The DNA sequence information is extremely valuable for identifying key genes controlling important agronomic traits and for identifying genetic variability among the cultivars. However, massive DNA re-sequencing and gene expression studies have to be performed to substantially improve our understanding of crop genetics. Application of the knowledge obtained from the genomes, transcriptomes, expression studies, and epigenetic studies would enable the development of improved varieties and may lead to a second green revolution. The applications of next generation DNA sequencing technologies in crop improvement, its limitations, future prospects, and the features of important crop genome projects are reviewed herein.
Url:
PubMed: 27019684
PubMed Central: 4807965
Affiliations:
Links toward previous steps (curation, corpus...)
- to stream Pmc, to step Corpus: 000272
- to stream Pmc, to step Curation: 000271
- to stream Pmc, to step Checkpoint: 000043
- to stream Ncbi, to step Merge: 001F74
- to stream Ncbi, to step Curation: 001F74
- to stream Ncbi, to step Checkpoint: 001F74
- to stream Main, to step Merge: 000057
- to stream Main, to step Curation: 000057
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Sequencing Crop Genomes: A Gateway to Improve Tropical Agriculture</title>
<author><name sortKey="Thottathil, Gincy Paily" sort="Thottathil, Gincy Paily" uniqKey="Thottathil G" first="Gincy Paily" last="Thottathil">Gincy Paily Thottathil</name>
<affiliation wicri:level="1"><nlm:aff id="af1-tlsr-27-1-93">Centre for Chemical Biology, Universiti Sains Malaysia, 11800 USM, Pulau Pinang, Malaysia</nlm:aff>
<country xml:lang="fr">Malaisie</country>
<wicri:regionArea>Centre for Chemical Biology, Universiti Sains Malaysia, 11800 USM, Pulau Pinang</wicri:regionArea>
<wicri:noRegion>Pulau Pinang</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Jayasekaran, Kandakumar" sort="Jayasekaran, Kandakumar" uniqKey="Jayasekaran K" first="Kandakumar" last="Jayasekaran">Kandakumar Jayasekaran</name>
<affiliation wicri:level="1"><nlm:aff id="af1-tlsr-27-1-93">Centre for Chemical Biology, Universiti Sains Malaysia, 11800 USM, Pulau Pinang, Malaysia</nlm:aff>
<country xml:lang="fr">Malaisie</country>
<wicri:regionArea>Centre for Chemical Biology, Universiti Sains Malaysia, 11800 USM, Pulau Pinang</wicri:regionArea>
<wicri:noRegion>Pulau Pinang</wicri:noRegion>
</affiliation>
<affiliation wicri:level="4"><nlm:aff id="af2-tlsr-27-1-93">Temasek Life Sciences Laboratory, National University of Singapore, Singapore 117543</nlm:aff>
<orgName type="university">Université nationale de Singapour</orgName>
<country>Singapour</country>
</affiliation>
</author>
<author><name sortKey="Othman, Ahmad Sofiman" sort="Othman, Ahmad Sofiman" uniqKey="Othman A" first="Ahmad Sofiman" last="Othman">Ahmad Sofiman Othman</name>
<affiliation wicri:level="1"><nlm:aff id="af1-tlsr-27-1-93">Centre for Chemical Biology, Universiti Sains Malaysia, 11800 USM, Pulau Pinang, Malaysia</nlm:aff>
<country xml:lang="fr">Malaisie</country>
<wicri:regionArea>Centre for Chemical Biology, Universiti Sains Malaysia, 11800 USM, Pulau Pinang</wicri:regionArea>
<wicri:noRegion>Pulau Pinang</wicri:noRegion>
</affiliation>
<affiliation wicri:level="1"><nlm:aff id="af3-tlsr-27-1-93">School of Biological Sciences, Universiti Sains Malaysia, 11800 USM, Pulau Pinang, Malaysia</nlm:aff>
<country xml:lang="fr">Malaisie</country>
<wicri:regionArea>School of Biological Sciences, Universiti Sains Malaysia, 11800 USM, Pulau Pinang</wicri:regionArea>
<wicri:noRegion>Pulau Pinang</wicri:noRegion>
</affiliation>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">PMC</idno>
<idno type="pmid">27019684</idno>
<idno type="pmc">4807965</idno>
<idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4807965</idno>
<idno type="RBID">PMC:4807965</idno>
<date when="2016">2016</date>
<idno type="wicri:Area/Pmc/Corpus">000272</idno>
<idno type="wicri:Area/Pmc/Curation">000271</idno>
<idno type="wicri:Area/Pmc/Checkpoint">000043</idno>
<idno type="wicri:Area/Ncbi/Merge">001F74</idno>
<idno type="wicri:Area/Ncbi/Curation">001F74</idno>
<idno type="wicri:Area/Ncbi/Checkpoint">001F74</idno>
<idno type="wicri:doubleKey">1985-3718:2016:Thottathil G:sequencing:crop:genomes</idno>
<idno type="wicri:Area/Main/Merge">000057</idno>
<idno type="wicri:Area/Main/Curation">000057</idno>
<idno type="wicri:Area/Main/Exploration">000057</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Sequencing Crop Genomes: A Gateway to Improve Tropical Agriculture</title>
<author><name sortKey="Thottathil, Gincy Paily" sort="Thottathil, Gincy Paily" uniqKey="Thottathil G" first="Gincy Paily" last="Thottathil">Gincy Paily Thottathil</name>
<affiliation wicri:level="1"><nlm:aff id="af1-tlsr-27-1-93">Centre for Chemical Biology, Universiti Sains Malaysia, 11800 USM, Pulau Pinang, Malaysia</nlm:aff>
<country xml:lang="fr">Malaisie</country>
<wicri:regionArea>Centre for Chemical Biology, Universiti Sains Malaysia, 11800 USM, Pulau Pinang</wicri:regionArea>
<wicri:noRegion>Pulau Pinang</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Jayasekaran, Kandakumar" sort="Jayasekaran, Kandakumar" uniqKey="Jayasekaran K" first="Kandakumar" last="Jayasekaran">Kandakumar Jayasekaran</name>
<affiliation wicri:level="1"><nlm:aff id="af1-tlsr-27-1-93">Centre for Chemical Biology, Universiti Sains Malaysia, 11800 USM, Pulau Pinang, Malaysia</nlm:aff>
<country xml:lang="fr">Malaisie</country>
<wicri:regionArea>Centre for Chemical Biology, Universiti Sains Malaysia, 11800 USM, Pulau Pinang</wicri:regionArea>
<wicri:noRegion>Pulau Pinang</wicri:noRegion>
</affiliation>
<affiliation wicri:level="4"><nlm:aff id="af2-tlsr-27-1-93">Temasek Life Sciences Laboratory, National University of Singapore, Singapore 117543</nlm:aff>
<orgName type="university">Université nationale de Singapour</orgName>
<country>Singapour</country>
</affiliation>
</author>
<author><name sortKey="Othman, Ahmad Sofiman" sort="Othman, Ahmad Sofiman" uniqKey="Othman A" first="Ahmad Sofiman" last="Othman">Ahmad Sofiman Othman</name>
<affiliation wicri:level="1"><nlm:aff id="af1-tlsr-27-1-93">Centre for Chemical Biology, Universiti Sains Malaysia, 11800 USM, Pulau Pinang, Malaysia</nlm:aff>
<country xml:lang="fr">Malaisie</country>
<wicri:regionArea>Centre for Chemical Biology, Universiti Sains Malaysia, 11800 USM, Pulau Pinang</wicri:regionArea>
<wicri:noRegion>Pulau Pinang</wicri:noRegion>
</affiliation>
<affiliation wicri:level="1"><nlm:aff id="af3-tlsr-27-1-93">School of Biological Sciences, Universiti Sains Malaysia, 11800 USM, Pulau Pinang, Malaysia</nlm:aff>
<country xml:lang="fr">Malaisie</country>
<wicri:regionArea>School of Biological Sciences, Universiti Sains Malaysia, 11800 USM, Pulau Pinang</wicri:regionArea>
<wicri:noRegion>Pulau Pinang</wicri:noRegion>
</affiliation>
</author>
</analytic>
<series><title level="j">Tropical Life Sciences Research</title>
<idno type="ISSN">1985-3718</idno>
<idno type="eISSN">2180-4249</idno>
<imprint><date when="2016">2016</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass></textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en"><p>Agricultural development in the tropics lags behind development in the temperate latitudes due to the lack of advanced technology, and various biotic and abiotic factors. To cope with the increasing demand for food and other plant-based products, improved crop varieties have to be developed. To breed improved varieties, a better understanding of crop genetics is necessary. With the advent of next-generation DNA sequencing technologies, many important crop genomes have been sequenced. Primary importance has been given to food crops, including cereals, tuber crops, vegetables, and fruits. The DNA sequence information is extremely valuable for identifying key genes controlling important agronomic traits and for identifying genetic variability among the cultivars. However, massive DNA re-sequencing and gene expression studies have to be performed to substantially improve our understanding of crop genetics. Application of the knowledge obtained from the genomes, transcriptomes, expression studies, and epigenetic studies would enable the development of improved varieties and may lead to a second green revolution. The applications of next generation DNA sequencing technologies in crop improvement, its limitations, future prospects, and the features of important crop genome projects are reviewed herein.</p>
</div>
</front>
</TEI>
<affiliations><list><country><li>Malaisie</li>
<li>Singapour</li>
</country>
<orgName><li>Université nationale de Singapour</li>
</orgName>
</list>
<tree><country name="Malaisie"><noRegion><name sortKey="Thottathil, Gincy Paily" sort="Thottathil, Gincy Paily" uniqKey="Thottathil G" first="Gincy Paily" last="Thottathil">Gincy Paily Thottathil</name>
</noRegion>
<name sortKey="Jayasekaran, Kandakumar" sort="Jayasekaran, Kandakumar" uniqKey="Jayasekaran K" first="Kandakumar" last="Jayasekaran">Kandakumar Jayasekaran</name>
<name sortKey="Othman, Ahmad Sofiman" sort="Othman, Ahmad Sofiman" uniqKey="Othman A" first="Ahmad Sofiman" last="Othman">Ahmad Sofiman Othman</name>
<name sortKey="Othman, Ahmad Sofiman" sort="Othman, Ahmad Sofiman" uniqKey="Othman A" first="Ahmad Sofiman" last="Othman">Ahmad Sofiman Othman</name>
</country>
<country name="Singapour"><noRegion><name sortKey="Jayasekaran, Kandakumar" sort="Jayasekaran, Kandakumar" uniqKey="Jayasekaran K" first="Kandakumar" last="Jayasekaran">Kandakumar Jayasekaran</name>
</noRegion>
</country>
</tree>
</affiliations>
</record>
Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Wicri/Bois/explor/OrangerV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000057 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 000057 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien |wiki= Wicri/Bois |area= OrangerV1 |flux= Main |étape= Exploration |type= RBID |clé= PMC:4807965 |texte= Sequencing Crop Genomes: A Gateway to Improve Tropical Agriculture }}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:27019684" \ | HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \ | NlmPubMed2Wicri -a OrangerV1
This area was generated with Dilib version V0.6.25. |